PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 1937aa    MW: 216906 Da    PI: 6.2675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009218genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003913281353123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                   +kC+   Cg++F +k++L+ H r+ +
  Lus10009218 1328 HKCEieGCGMRFETKEDLVLHSRNrC 1353
                   79*******************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.8E-131555IPR003349JmjN domain
PROSITE profilePS5118313.4671657IPR003349JmjN domain
PfamPF023751.1E-131750IPR003349JmjN domain
SMARTSM005583.4E-46283452IPR003347JmjC domain
SuperFamilySSF511976.32E-26284450No hitNo description
PROSITE profilePS5118434.624286452IPR003347JmjC domain
PfamPF023732.6E-34316435IPR003347JmjC domain
Gene3DG3DSA:3.30.160.605.7E-513231350IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.113281350IPR015880Zinc finger, C2H2-like
SMARTSM003550.2113511375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94913511380IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-413521375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013531375IPR007087Zinc finger, C2H2
SuperFamilySSF576676.09E-1413621418No hitNo description
Gene3DG3DSA:3.30.160.607.4E-513761393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003613811405IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7813811410IPR007087Zinc finger, C2H2
PROSITE patternPS00028013831405IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-913991423IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF514455.08E-17814381926IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.4E-20314381926IPR013781Glycoside hydrolase, catalytic domain
PfamPF002321.3E-16014501928IPR001360Glycoside hydrolase family 1
PROSITE patternPS00653014561470IPR033132Glycosyl hydrolases family 1, N-terminal conserved site
PRINTSPR001311.4E-1817511765IPR001360Glycoside hydrolase family 1
PRINTSPR001311.4E-1818291837IPR001360Glycoside hydrolase family 1
PRINTSPR001311.4E-1818521863IPR001360Glycoside hydrolase family 1
PRINTSPR001311.4E-1818741891IPR001360Glycoside hydrolase family 1
PRINTSPR001311.4E-1818981910IPR001360Glycoside hydrolase family 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1937 aa     Download sequence    Send to blast
MGNVEIPKWL QGLPLAPEFR PTDTEFADPI AYISKIEKEA GAFGMCKIIP PLPKPSKKYV  60
FSNLNKTLAK SPELGDNCSS LKSGSGVDGK DGDMRAVFTT RHQELGQSIK KKGVEKETPQ  120
MVFHKQVWQS GEVYTLEQFE SKSKAFAKSM LGSVKEVSPL VIEALFWKAA FEKPIYVEYA  180
NDVPGSAFGE PEGQFRYFNR RRRRRASYQS YRRHGEGYNC QNNELIAVDN NAADEVVDAS  240
IKSDPSPSSL STSSTALSSK FVKSYNQKGE SSSCDVEGTA GWKLSNSPWN LQMIARSPGS  300
LTRYMPDDIP GVTSPMVYIG MLYSWFAWHV EDHELHSMNF LHTGSPKTWY SVPGDYAFAF  360
EEIIRRQAYG GKLDRLASLS RLGEKTTLLS PEVVVSSGIP CCRVIQNPGE VVVTFPRAYH  420
VGFSHGFNCG EAANFSTPQW LEVAKEAAVR RAAMNYLPML SHQQLLYLLT MSFVLRVPRS  480
LLPGARSSRL RDRQKEEREL SVKRAFIEDL LRENNTLRAI LRKGPGCKAV IWNPDLLPRA  540
SKQSQLIDTC TAATRMEEDL CHTRLEHENN STSNLFTEMS KYVESLNDLY ADGGDISCDF  600
QVDSGSLVCI ACGILGFPFM SVVQPSEKAA EESLYVDNTF RRVHSSADCN DDPHSVPDQT  660
PALKDLKVPT GWDISNKFLR PRIFCLEHGL QICELLQSRG GANMLVMCHS DFQKMKAYAT  720
SISEEINVPF DYTHIPLESA LNEDLNLIDL AIDGHDWDGR GEDWTSKMGV NLLHCVKIRK  780
KSPSTHVHHA LALAGLFTEG SLSSEFSTLK WESRRSRSRN KLNHSASFSG GKFESKKDDM  840
PEKVSDGVAR KEEKLLCYTR RKSKNKEDCS INGGQDQLYL IRQTSKVSRN SKVGINSLED  900
LGVNPDGVSE NHNEVQFHEA TATTTAVVNS GPSVDTTCSA VMSDPEAFSN SEMRNGIIAA  960
LESSERGLNS NVATDNGLLV ICKDDTENVI TYDRASKRGL NLQVDRDGLV SETSDVANSP  1020
SAEAELVVAE TCCTKREACN HVTSQSEQQE EGQKLPNSNY VISSNETVTT ETITLNGEAC  1080
EQLQDISLVE DAMQKQTEYC DDREEMMQSK LQSEEEPDLG PLDGSGSSES VREQIDLPVT  1140
TQELASSSTS EMEDQPIPET MEACCEPCAT SRTDEDSSAF KNSDGEVEPV NNSVDGMPEC  1200
FEIRTGSEMD EESSAVRSAV EENRSSPPHG HGSIESASSG SIHVKVRKRR RELDQITEDN  1260
LNFKSFVRSP CERLRPRRMG RDDPSTSGAD LEKIPVENAV AKRSRSKRPS NDPVNSQLKK  1320
KQVTKRPHKC EIEGCGMRFE TKEDLVLHSR NRCPYEGCRK KFSSHRYALI HQRVHDDDRP  1380
LKCPWKGCKM AFKWAWARTE HIRVHTGEKP YHCKVDGCGL AFSPLIIIII IIYHLATILH  1440
LVSSDSISRA HFPDGFIFGT ASSAYQFEGA ATEGNKGASI WDTFTRKPGS SSPGRILDFS  1500
NADVAVDQYH RFQDDIGLMK DLGMDTYRFS ISWARIFPNG TGNLNPEGIT YYNKLIDGLL  1560
EKGIKPYVTL YHWDLPQMLQ DKYGGWLDKK IIEDFEHYAN TCFKAFGDRV KNWITFNEPH  1620
NFAIQSYDFG IQAPGRCSII GHLFCKEGNS SAEPYIVAHH ILSSHAAAYH SYQSYFKGKQ  1680
GRIGIVLDAK WFEPKSDADE DKDAANRAMD FTLGWFLDPI FVGRYPLSMR KLAGERLPEI  1740
SSEMAKLITG SVDFVGLNHY TTSYVRNDRS RFQKLILQDA STDSAVITSS YRNGIAIGEK  1800
AASSWLRIVP WGIRKLMNYV KDKYGNPLVI ITENGMDDPN SPFIPREKAL QDEKRIEYHR  1860
DYLSNLSASI REDGCNVGGY FIWSLLDNWE WNSGYTVRFG LYYVDYSHNL TRIPKASVNW  1920
FKSMLRSQST ELDSQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gno_A0.0144319278488Os03g0212800 protein
3gnp_A0.0144319278488Os03g0212800 protein
3gnr_A0.0144319278488Os03g0212800 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195204RYFNRRRRRR
212461250RKRRR
313021307RSRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8856831e-146HQ885683.1 Linum usitatissimum clone Contig1587 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447777.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0D2TY860.0A0A0D2TY86_G
STRINGGLYMA20G32160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein